Data Set Citation:
When using this data, please cite the data package:
Matsuoka S , Hatano Y , and Osono T.
Distribution and functional data of fungal families
ERDP-2022-02.1.3 (https://db.cger.nies.go.jp/JaLTER/metacat/metacat/ERDP-2022-02.1.3/jalter-en)
General Information:
Title:Distribution and functional data of fungal families
Identifier:ERDP-2022-02.1.3
Abstract:
Fungi have unique ecosystem functions, such as organic matter decomposition, parasitism, and symbiosis with other organisms in terrestrial and aquatic ecosystems. Their taxonomic and functional diversities are essential factors for predicting ecosystem functions and their responses to environmental changes. With the widespread use of high-throughput sequencing (HTS) in recent years, the detection of fungal DNA sequences in various regions and on different environmental substrates has advanced. HTS-obtained DNA sequences can be compared with those in databases to identify the taxa of organisms from which they are derived. Therefore, a global DNA database containing taxonomic information has been developed. However, functional data on the distribution and function of individual taxa remain scarce. In this study, the ecological information of each fungal family was compiled from review papers and published books. Specifically, the following information was collected: reported distribution (11 categories including information on the presence of fungi in Japan) and function (38 categories related to ecological functional data, such as guilds and habitats) of 553 families included in the literature. These data will provide information on the ecology of specific fungi detected in the field and help estimate the functional group composition and diversity of fungi from their DNA assemblage data. The detailed Metadata for this abstract published in the Data Paper section of the journal is available in MetaCat in JaLTER at http://db.cger.nies.go.jp/JaLTER/metacat/metacat/ERDP-2022-02.1/jalter-en.
Data Table, Image, and Other Data Details:
Metadata download: Ecological Metadata Language (EML) File
Data Table:Distribution ( View Metadata | Download File download)
Data Table:Ecology ( View Metadata | Download File download)
Data Table:Taxonomy / Taxonomy ( View Metadata | Download File download)
Other Data:data descriptor ( View Metadata | Download File download)

Involved Parties

Data Set Owners:
Individual: Shunsuke Matsuoka
Organization:Graduate School of Information Science, University of Hyogo
Address:
Hyogo Japan
Individual: Yuki Hatano
Organization:Graduate School of Science and Engineering, Doshisha University
Address:
Kyoto Japan
Individual: Takashi Osono
Organization:Faculty of Science and Engineering, Doshisha University,
Address:
Kyoto Japan
Data Set Contacts:
Individual: Shunsuke Matsuoka
Organization:Graduate School of Information Science, University of Hyogo
Address:
7-1-28 Minatojima minamimachi, Chuo-ku,
Kobe, Hyogo 650-0047 Japan
Phone:
+81 78 303 1986 (voice)
Phone:
+81 78 303 1986 (fax)
Email Address:
code_matuoka@hotmail.com
Individual: Takashi Osono
Organization:Faculty of Science and Engineering, Doshisha University,
Address:
1-3 Tatara Miyakodani,
Kyotanabe, Kyoto Japan
Email Address:
tosono@mail.doshisha.ac.jp

Data Set Characteristics

Sampling, Processing and Quality Control Methods

Step by Step Procedures
Step 1:
Description:

Methods

We summarized the taxonomy, distribution, and ecological function data of 553 fungalfamilies from published books (Cannon and Kirk, 2007; Katsumoto, 2010) and reviewpapers (Osono, 2007; Aldossari and Ishii, 2021; Osono and Kado, 2021), which arecomprehensive references on the distribution and function of each fungal family. Taxonomic information was recorded by classifying each family into one of thefollowing phyla: Ascomycota, Basidiomycota, Mucoromycota, Blastocladiomycota,Chytridiomycota, and Neocallimastigomycota. Distribution was first presented in 11 categories (cosmopolitan, widespread,tropical, subtropical, temperate, dryland, boreal, subarctic, Arctic, Antarctic, and Japan).For tropical and temperate regions, where more detailed information on occurrenceareas is available, the detailed occurrence information was grouped by continental orregional scales. An entry for Japan was based on the families listed by Katsumoto(2010). For the species listed by Katsumoto (2010), all family names were consistentwith those reported by Cannon and Kirk (2007) except the following families:Apiosporaceae, Batrachochytriaceae, Caloscyphaceae, Chorioactidaceae, Cyphellaceae,Kondoaceae, and Shiraiaceae. The ecological function information of 553 fungal families from the publishedliterature was compiled into 38 items (Section 2.4.D) related to guilds, habitats, andsubstrates. Information on 35 of these items was compiled according to Cannon andKirk (2007). We recorded which fungal families were associated with lignindecomposition (17 families; Osono, 2007), denitrification (16 families; Aldossari andIshii, 2021), and phosphate solubilization (27 families; Osono and Kado, 2021) basedon a literature review of articles and genome databases that describe the ecologicalfunctionsof fungi from Europe, North America, Australia, and other continents. Because of the difficulty in rigorously defining terms, such as guild, habitat, substrate, and ecological characteristics, without overlaps, no further hierarchical grouping was performed for the 38 items. Moreover, each item was not mutually exclusive. For example, “saprobic” and “parasitic” were checked for families that included saprobic and parasitic species. Information on distribution and ecological functions is based on available data. Therefore, even in a family without information on distribution or function, this does not necessarily mean that fungi belonging to that family are not distributed in a given area or do not have that function.

Data Set Usage Rights

The dataset was published under the Creative Commons License Attribution NonCommercial 4.0 International (CC BY-NC 4.0).
Access Control:
Auth System:JaLTER
Order:allowFirst
Allow: [read] public
Metadata download: Ecological Metadata Language (EML) File