Data Set Citation:
When using this data, please cite the data package:
Kumagai N.
Quantitative records of habitat-forming seaweeds found in Japanese temperate and subtropical zones (fucoids and kelps)
ERDP-2020-07.1.1 (https://db.cger.nies.go.jp/JaLTER/metacat/metacat/ERDP-2020-07.1.1/jalter-en)
General Information:
Title:Quantitative records of habitat-forming seaweeds found in Japanese temperate and subtropical zones (fucoids and kelps)
Identifier:ERDP-2020-07.1.1
Abstract:
This data paper introduces a data set of quantitative records, including biomass (wet and dry weight), cover, shoot density, and shoot length, of habitat-forming seaweeds (temperate kelps and fucoids) collected at 400 sites (2,115 sampling points) of a warm-to-cold temperate zone of the Japanese coast from 1957 to 2013. The data set includes 8,885 occurrence records of 58 species, extracted from 64 literature sources, most of which were written in local language. The data set compiled the quantitative records of seaweeds at each study site, each year and each month; the geographical location; the vertical distribution; and the scientific names. Furthermore, one supporting data set was added that included the name of the corresponding literature list. The data set was formatted as Darwin Core and its extension, “Sample-based Data.” Scientific names were updated to ones that are currently accepted based on Algaebase (http://www.algaebase.org). A comprehensive distribution (presence and absence) data set of Japanese habitat-forming seaweeds has been published (Kumagai et al. 2016 Ecological Research 31: 759), which covers geographic distribution and the associated long-term changes in seaweeds found in Japanese temperate and subtropical zones. Here, this data set focuses more on changes in seaweed quantity according to season and depth. This rich data set can be used to analyze the seasonal, long-term changes and spatial differences in the biomass and community structure of habitat-forming seaweeds along the Japanese coast. These datasets are published under a Creative Commons attribution license CC-BY NC 4.0 (https://creativecommons.org/licenses/by-nc/4.0/).
Keywords:
  • biomass
    (ja) biomass
  • climate change
  • long-term monitoring
  • macroalgae
  • Sargassum
Data Table, Image, and Other Data Details:
Metadata download: Ecological Metadata Language (EML) File
Data Table:Literature database ( View Metadata | Download File download)
Data Table:seaweedDB ( View Metadata | Download File download)
Other Data:data_descriptor ( View Metadata | Download File download)

Involved Parties

Data Set Owners:
Individual: Naoki H. Kumagai
Organization:Center for Environmental Biology and Ecosystem Studies, National Institute for Environmental Studies
Address:
16-2 Onogawa,
Tsukuba, Ibaraki 305-8506 Japan
Email Address:
nh.kuma@gmail.com
Data Set Contacts:
Individual: Naoki H. Kumagai
Organization:Center for Environmental Biology and Ecosystem Studies, National Institute for Environmental Studies
Address:
16-2 Onogawa,
Tsukuba, Ibaraki 305-8506 Japan
Phone:
+81-29-850-2470 (voice)
Phone:
+81-29-850-2470 (fax)
Email Address:
nh.kuma@gmail.com

Data Set Characteristics

Geographic Region:
Geographic Description:The specific geographical positions of the individual locations and the year and month of each record surveyed are listed in SeaweedDB.
Bounding Coordinates:
West:  124.2589  degrees
East:  141.9816  degrees
North:  45.4247  degrees
South:  24.3833  degrees
Mimimum Altitude:0.0  meter
Maximum Altitude:0.0  meter
Time Period:
Begin:
1957
End:
2013

Sampling, Processing and Quality Control Methods

Step by Step Procedures
Step 1:
Description:

Methods

A. Taxonomic screening The targets of this data set are habitat-forming seaweed species in rocky coastal communities, spreading from the warm to the cold temperate zones (Spalding et al. 2007) in Japan. Many of these species belong to the class Phaeophyceae, which includes Fucales (fucoids, mainly Sargassum spp.) and Laminariales (kelps) found in the temperate zone (Undaria spp., Ecklonia spp., Saccharina japonica, and S. japonica var. religiosa). We updated scientific names based on the nomenclature that is currently accepted in Algaebase (Guiry & Guiry 2019). Overall, we registered 58 species. Refer Kumagai et al. (2016) for detailed information on taxonomic screening. B. Literature collection First, we searched for literature that included seaweed-quantity records among the 355 literature sources listed in Kumagai et al. (2016). We compiled not only those quantity records but also seasonal and elevational (depth) changes, which are hardly described in Kumagai et al. (2016) because of the difference in the aim of their study. Second, we obtained additional quantitative records of seaweed by asking professional researchers and via internet searches of literature using Google Scholar (http://scholar.google.com/) and CiNii (http://ci.nii.ac.jp/en) with the key words “seaweeds, biomass, cover, or survey(s)” as well as the scientific and Japanese name(s) of each species in Japan. We started this search in April 2017 and finally updated the search at the end of Jul 2018. The descriptions obtained from the compiled literature are listed in LiteratureDB. The descriptions of seaweed quantity included percent cover, dry weight, wet weight, shoot density, and shoot length. Although most of them are described at the species level, several descriptions of wet weight pertain to total seaweed. Therefore, we also allowed the inclusion of wet weight for total seaweeds. Furthermore, several reports only include the range of seaweed quantity, particularly in percent cover (e.g., “50%–75%,” “<5%”). In these cases, we quantified them using the average value and the accuracy. Moreover, two types of “percent cover” were found: the total cover of all species was 100% or >100%. The location (latitude and longitude) and the elevation (i.e., water depth) of each quadrate were obtained from the description provided in each reference. We also found other minor types of quantity records (e.g., dry weight of total seaweeds); however, we did not include them in our data set because the number of such records was too small (<50). Most of the literature only provides a map or name of the study locations from which we obtained their approximate coordinates using Google Maps (https://maps.google.com/, Google Inc., Mountain View, CA, USA). Most of the sites were identified because Japanese lands along the coastal line are well discriminated by local names. The geographical position of 88.5% of the locations was identified with an accuracy of 1 km. There were two peaks in the number of records: 1970s because of the comprehensive surveys of the Fishery Agency and 2000s because of the increase in the number of various local surveys (Fig. 1) in response to the degradation of the Japanese seaweed community (Kumagai et al. 2018). The number of records was largest for the cover (6,462), and the second largest for wet weight (1,848) (Table 1). Each of the parameters widely distributed along Japanese coats (Fig. 2), although the geographic range of the cover was biased to the southern half of Japan (Fig. 2D). In terms of the number of records and the geographic range, the wet weight was the most representative variable in this data set (Fig. 2B). Moreover, most frequently, the wet weight was recorded with the other type of quantitative parameter (Table 1).

Data Set Usage Rights

A. License and usage rights 1) Acceptable use. Use of the data set will be restricted to academic, research, educational, government, biodiversity conservation, or other non-profit professional purposes, under a Creative Commons attribution license CC-BY NC 4.0 (https://creativecommons.org/licenses/by-nc/4.0/). 2) Citation. Data users should properly cite this data paper in any publications or in the metadata of any derived data products that were produced using the data set. As the metadata and the data set may be updated, the date at which the data was retrieved should also be included in the citation. 3) Collaboration. Data users are strongly encouraged to consider consultation, collaboration, and/or co-authorship with the authors.
Access Control:
Auth System:JaLTER
Order:allowFirst
Allow: [read] public
Metadata download: Ecological Metadata Language (EML) File